scGPT
v0.1.6

Getting Started:

  • Introduction
  • installation

Tutorials:

  • GRN Inference on Pre-trained Model
  • Fine-tuning on Pre-trained Model with Batch Integration
  • Fine-tuning on Pre-trained Model for Cell-type Annotation
  • Fine-tuning Pre-trained Model for Perturbation Prediction
  • Reference Mapping Using cell embedding by pretrained scGPT model

API Reference:

  • scgpt package

References:

  • FAQ
  • References
scGPT
  • Overview: module code

All modules for which code is available

  • scgpt.data_sampler
  • scgpt.loss
  • scgpt.model.dsbn
  • scgpt.model.generation_model
  • scgpt.model.grad_reverse
  • scgpt.model.model
  • scgpt.preprocess
  • scgpt.scbank.data
  • scgpt.scbank.databank
  • scgpt.scbank.setting
  • scgpt.tasks.cell_emb
  • scgpt.tasks.grn
  • scgpt.tokenizer.gene_tokenizer
  • scgpt.utils.util

© Copyright 2023, Wanglab, Haotian Cui. Revision c114215d.

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